Calculate WHPT scores
Usage
calc_whpt(
data,
taxon_table = macroinvertebrateMetrics::macroinvertebrateTaxa,
names = macroinvertebrateMetrics::column_attributes$name,
questions = c("Taxon abundance", "Taxon Abundance", "Live abundance"),
metric_cols = macroinvertebrateMetrics::metric_cols
)Arguments
- taxon_table
Optional Dataframe with WHPT scores and taxa. Default is NULL and will use built in WHPT scores. But you could supply custom dataframe if required for experimenation/development purposes.
- names
Optional, user provided list of column names different to those used in `column_attributes` to match with input data
- questions
Optional, user provided 'question' default is 'Taxon abundance', which filters only abundance values.
- ecologyResults
Dataframe of taxonomic results with mandatory three columns:
- SAMPLE_ID
Unique sample identifier
- RESULT
Numeric abundance
- TAXON
Character - TL2 WHPT taxon name
Columns names must match these exactly, but the column order does not matter. See demoEcologyResults for example dataset.